MmuEX6102671 @ mm9
Exon Skipping
Gene
ENSMUSG00000034101 | Ctnnd1
Description
catenin (cadherin associated protein), delta 1 [Source:MGI Symbol;Acc:MGI:105100]
Coordinates
chr2:84449117-84450815:-
Coord C1 exon
chr2:84450665-84450815
Coord A exon
chr2:84449687-84449879
Coord C2 exon
chr2:84449117-84449231
Length
193 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTTTACTGCTGTAGGCA
3' ss Score
9.61
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
TATGGCAGATACATCCGCTCTGCTCTTCGTCAGGAGAAGGCTCTCTCTGCCATAGCTGAGCTCCTTACGAGTGAGCATGAGCGAGTAGTAAAAGCTGCTTCTGGGGCACTGAGAAATCTGGCTGTGGATGCTCGGAACAAAGAGTTAATTG
Seq A exon
GCAAGCATGCTATTCCTAACTTGGTAAAGAATCTGCCAGGAGGTCAACAGAACTCCTCCTGGAATTTTTCTGAAGATACTGTGGTCTCCATATTGAACACCATCAACGAAGTTATCGCTGAGAACTTAGAAGCTGCCAAAAAGCTTCGAGAGACGCAGGGTATTGAGAAGCTGGTGTTGATCAACAAATCAGG
Seq C2 exon
GAATCGTTCAGAAAAAGAAGTCCGGGCAGCAGCTCTTGTCCTGCAGACAATCTGGGGCTATAAGGAGCTTCGGAAGCCACTGGAAAAAGAAGGATGGAAGAAATCAGACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034101-'22-22,'22-19,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.083
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=76.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
ENSMUSP00000042543, ENSMUSP00000064518, ENSMUSP00000065252, ENSMUSP00000097524, ENSMUSP00000107299, ENSMUSP00000107304, ENSMUSP00000107305, ENSMUSP00000107306, ENSMUSP00000107307, ENSMUSP00000107313, ENSMUSP00000107314, ENSMUSP00000107315, ENSMUSP00000107316, ENSMUSP00000107317, ENSMUSP00000107318, ENSMUSP00000107319, ENSMUSP00000107320, ENSMUSP00000107321, ENSMUSP00000107322, ENSMUSP00000107324, ENSMUSP00000107325, ENSMUSP00000107326, ENSMUSP00000107327
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATACATCCGCTCTGCTC
R:
TCCATCCTTCTTTTTCCAGTGGC
Band lengths:
245-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: