GgaEX1018141 @ galGal4
Exon Skipping
Gene
ENSGALG00000007330 | CTNND1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q5ZJ21]
Coordinates
chr5:16246853-16247671:-
Coord C1 exon
chr5:16247521-16247671
Coord A exon
chr5:16247074-16247266
Coord C2 exon
chr5:16246853-16246967
Length
193 bp
Sequences
Splice sites
3' ss Seq
CGACTATTTGCCCTTATTAGGTA
3' ss Score
7.13
5' ss Seq
TGGGTAGGC
5' ss Score
6.03
Exon sequences
Seq C1 exon
TACGGCCGGTACATCCGCTCGGCACTCCGCCAGGAGAAGGGACTCTCTGCCATTGCTGACCTCCTGACTCATGACAGTGAACGTGTGGTGAAAGCAGCATCTGGAGCCCTCCGCAACCTGGCTGTTGACTTACGTAACAAAGAGCTGATAG
Seq A exon
GTAAACATGCCATCCCCAATTTAGTGAAGAACCTGCCTGGAGGCCAGCAGACTCCAGCCAAAAACCTCTCTGAGGATACAGTGGTGTCCATCCTCAATACCATCAATGAAGTCATTGTAGACAACCTTGAGGCTGCCAAGAAGTTGCGGGAAACGCAGGGGATTGAGAAGTTGGTGCTGATCAACAAAACTGG
Seq C2 exon
GAACCGCTCAGAGAGAGAAGTCCGAGCAGCTGCCGTCGTCTTGCAGACAGTCTGGGGATATAAAGAGCTACGGAAGCCCCTGGAGAAGGAAGGCTGGAAGAAGTCAGATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007330_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACATCCGCTCGGCACTC
R:
TTCCAGCCTTCCTTCTCCAGG
Band lengths:
242-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]