DreEX6032658 @ danRer10
Exon Skipping
Gene
ENSDARG00000078233 | ctnnd1
Description
catenin (cadherin-associated protein), delta 1 [Source:ZFIN;Acc:ZDB-GENE-110208-9]
Coordinates
chr1:43516757-43521099:+
Coord C1 exon
chr1:43516757-43516907
Coord A exon
chr1:43519064-43519259
Coord C2 exon
chr1:43520909-43521099
Length
196 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTTTTTTCTGTGCAGGGA
3' ss Score
11.34
5' ss Seq
CAGGTGCGA
5' ss Score
7.75
Exon sequences
Seq C1 exon
TATGGGCGCTACATCAGAGCAACGATGAGACAGGAGCATGGCCTGCCAATGATGACGGAGCTGCTGTCTCATGGGAATGACCGCGTGGTCCGAGCCATGTCTGGAGCGCTGAGGAACCTGGCCATTGATGCTCGCAACCGTGAGCTGCTAG
Seq A exon
GGAAGCATGCGGTGCCTAACTTGGTGGCGAATCTGCCAGGCGGAGGTCAGAGTCAACCTGCGCGCGCACTCTCGGAGGAGACGGTGGTGTCTGTTCTCAGCACCATGGCAGAAGTGGTCGGCTCCAGTGTGGATGCTGCCAAAACACTGCGCAGCGCCCAGGGCATCGAGAGGCTGGTGCTTATCAACAAAGACAG
Seq C2 exon
CAACCGTTCAGATCGTGAGGTGCGTGGTGCAGGCCTGGTGCTGCAGATCGTGTGGGGCTTTAAGGAGCTCCGCCGCACTCTGGAGAAAGACGGCTGGAAGAAAACCGACTTCATGGTGAACCTGAACCCGCCAAACAACACCCGCAGCAACGGGGGCTACGAGGAGAGCACCCTGCCGCTAATAGACAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078233-'23-22,'23-21,24-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.144 A=0.182 C2=0.492
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=76.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAACGATGAGACAGGAGC
R:
CGGTTTTCTTCCAGCCGTCTT
Band lengths:
242-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]