BtaEX6060911 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002411 | CTNND1
Description
catenin (cadherin-associated protein), delta 1 [Source:HGNC Symbol;Acc:HGNC:2515]
Coordinates
chr15:82320804-82322338:+
Coord C1 exon
chr15:82320804-82320954
Coord A exon
chr15:82321682-82321874
Coord C2 exon
chr15:82322224-82322338
Length
193 bp
Sequences
Splice sites
3' ss Seq
CTCCCGTCTTACCGCTGTAGGTA
3' ss Score
9.72
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
TATGGTCGATACATCCGCTCAGCTCTGCGTCAAGAGAAAGCTCTTTCCGCCATTGCTGACCTCCTGACCAATGAACACGAGCGGGTTGTGAAAGCTGCATCTGGAGCCCTGAGAAACCTGGCTGTGGATGCGCGCAACAAAGAGTTGATTG
Seq A exon
GTAAACATGCCATTCCTAACTTGGTCAAGAATCTGCCAGGAGGGCAGCAGAGCTCTTCGCAGAATTTCTCTGAGGACACTGTGGTCTCTATTCTGAACACCATCAACGAAGTTATCGCTGAGAACTTGGAGGCTGCCAAAAAGCTCCGGGAGACCCAGGGTATTGAGAAGCTGGTTTTGATCAACAAATCAGG
Seq C2 exon
GAACCGCTCAGAAAAAGAAGTTCGAGCAGCCGCGCTTGTGTTACAGACGATCTGGGGGTATAAGGAGCTGCGGAAGCCACTGGAGAAGGAAGGCTGGAAGAAGTCAGACTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002411-'37-25,'37-24,39-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.108 C2=0.103
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=76.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATACATCCGCTCAGCTCTGC
R:
TTCCAGCCTTCCTTCTCCAGT
Band lengths:
243-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]