BtaEX6074411 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001473 | ARVCF
Description
Bos taurus armadillo repeat gene deleted in velocardiofacial syndrome (ARVCF), mRNA. [Source:RefSeq mRNA;Acc:NM_001105380]
Coordinates
chr17:74931633-74932413:-
Coord C1 exon
chr17:74932263-74932413
Coord A exon
chr17:74931974-74932172
Coord C2 exon
chr17:74931633-74931744
Length
199 bp
Sequences
Splice sites
3' ss Seq
CCGCTGCCCGCCGCCCGCAGGGA
3' ss Score
9.93
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TGGGCCACGTACATCCGCGCCGCGGTGCGCAAGGAGCGCGGGCTGCCGGTGCTGGTGGAGCTGCTGCAGTCGGAGACCGACAAGGTGGTGCGCGCCGTCGCCATCGCCCTGCGCAACCTCTCGCTCGACCGGCGCAACAAAGACCTTATCG
Seq A exon
GGAGCTACGCCATGGCCGAGCTTGTGAGAAACGTGCGCAGCGCGCAGGCGCCCGCCCGGCCCGGTGTCCGCCTGGAGGAGGACACAGTGGTGGCCGTGCTCAACACGATCCACGAGATCGTGTCCGACAGTCTGGACAACGCGCGCTCGCTGCTGCAAGCTCGCGGCGTGCCCGCGCTGGTGGCACTGGGCGCCTCCAG
Seq C2 exon
CCAATCGGTGCGCGAGGCGAAGGCCGCGTCGCACGTGCTGCAGACCGTGTGGAGCTACAAGGAGCTGCGCAGCGCCCTCCAGAAGGACGGCTGGAGCAAGGCGCGCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001473-'14-22,'14-21,15-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.105
Domain overlap (PFAM):
C1:
PF136461=HEAT_2=PD(38.9=72.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCACGTACATCCGC
R:
CTTGCTCCAGCCGTCCTTCT
Band lengths:
251-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]