RnoEX6057779 @ rn6
Exon Skipping
Gene
ENSRNOG00000001888 | Arvcf
Description
ARVCF, delta catenin family member [Source:RGD Symbol;Acc:1306655]
Coordinates
chr11:86738594-86739391:-
Coord C1 exon
chr11:86739241-86739391
Coord A exon
chr11:86738807-86739005
Coord C2 exon
chr11:86738594-86738705
Length
199 bp
Sequences
Splice sites
3' ss Seq
CGTCTGACCCTGCTTCTTAGGGA
3' ss Score
7.23
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TGGGCCACGTATATCCGTGCCACAGTGCGCAAGGAACGTGGGCTGCCAGTGCTGGTGGAACTGCTACAGTCTGAGACCGACAAGGTGGTGCGTGCTGTGGCCATCGCACTGCGCAACCTGTCACTAGACCAGCGGAACAAAGACCTCATCG
Seq A exon
GGAGCTACGCCATGACAGAGCTGGTTCGGAATGTTCGCAACGCACAGGCTCCTGCCCACCCCAGTGCCCACCTGGAGGAGGATACAGTGGTAGCTGTGCTCAACACCATCCATGAGATTGTGTCCGACAGCCTGGACAATGCTCGCTCCCTCCTGCAGGCCCGTGGTGTGCCTGCACTGGTGGCACTTGTGGCCTCCAG
Seq C2 exon
CCAGTCAGTGCGGGAGGCCAAGGCAGCATCACACGTGCTACAGACTGTGTGGAGCTACAAGGAGCTGCGTGGAGCCCTACAGAGGGACGGCTGGACGAAAGCACACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001888-'29-26,'29-24,30-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.134 C2=0.132
Domain overlap (PFAM):
C1:
PF136461=HEAT_2=PD(39.4=72.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATATCCGTGCCACAGTGCG
R:
TGGAAGTGTGCTTTCGTCCAG
Band lengths:
254-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]