GgaEX1009271 @ galGal4
Exon Skipping
Gene
ENSGALG00000002040 | ARVCF
Description
armadillo repeat gene deleted in velocardiofacial syndrome [Source:RefSeq peptide;Acc:NP_989796]
Coordinates
chr15:1058436-1060921:-
Coord C1 exon
chr15:1060771-1060921
Coord A exon
chr15:1059238-1059430
Coord C2 exon
chr15:1058436-1058547
Length
193 bp
Sequences
Splice sites
3' ss Seq
TATCTCTTCCACTTTTCCAGGTA
3' ss Score
10.73
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TGGTCCACATACATTCGTGCAACAGTGAGGAAAGAGAGAGGCTTGCCAGTGCTTGTGGAGCTACTCCAGTCCGACTCTGACAAGGTTGTGAGGGCTGTTTCGATTGCCTTGAGAAACCTTTCCATGGATCGCCGCAATAAAGACCTTATAG
Seq A exon
GTAGTTATGCCATGGGTGAGCTGGTTAGAAATTTGCCCAGCAGGCAGCAGAGATCTGCAAAGAACCTGGAAGAGGATACAGTGGTTGCTGTATTGAATACAATCCATGAAATCATTACTGACAGCTCAGAAAATGCAAGGTCTCTGATCCAGACACAGGGCATTCAGAAGCTGGTGGCTATCAGCAAGTCAAG
Seq C2 exon
CCAGTCTCCTCGAGAAACAAAAGCAGCGTCTCACGTTCTTCAGATGATCTGGAGCTACAAGGAGTTACGAAATGCTTTGCAGAAAGATGGCTGGAACAAATCACACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.184 C2=0.447
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=76.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCACATACATTCGTGCA
R:
CCAGCCATCTTTCTGCAAAGC
Band lengths:
245-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]