GgaEX1010135 @ galGal3
Exon Skipping
Gene
ENSGALG00000017106 | ATP8A2
Description
NA
Coordinates
chr1:181305225-181328604:+
Coord C1 exon
chr1:181305225-181305329
Coord A exon
chr1:181321239-181321330
Coord C2 exon
chr1:181328320-181328604
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTCTTTCCCTCAGCGT
3' ss Score
11.73
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
GGCCAAGCATACCTACCATAAATCTTTGCTGGAACAAGTTCAAGAGTTGGAGATGAAGACAAGAGAGCTGGGAAAAGCCATGCTTCGTGACAGTAATGGAAAGAG
Seq A exon
CGTGAACGAACGTGATCATTTGTTAAAAAGGCTTGGCAGGAAAACTCCTCCGAGCCTTTTCCGTGCTCATTCTGTCCAGCAAAGTGTATCAC
Seq C2 exon
ATGGATATGCGTTTTCTCAAGAAGAACACGGTGTTGTCTCCCAGTCACAAGTTGTTCGATCCTACGACACAACCAAAAGGAGAACAGAAATAGAATAAATGGTTCTTTGCTTGATGGGTGGTGGGAATAATGGGATTTGGATCAGTGCATCCACTCTTAACACATTCTTGACTAGGGTTGGCAGCAGCAGCCAAGACACCAGAGAACTCATTTCTGTGGCCTTAGCCAACACGTTTCTGTATTCTCCCTGCAAACCTTGAGTAGTACATGTTGTGGGGGGAAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017106-'36-37,'36-36,37-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAGAGCTGGGAAAAGCC
R:
TCCCATTATTCCCACCACCCA
Band lengths:
182-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]