GgaEX1010135 @ galGal4
Exon Skipping
Gene
ENSGALG00000017106 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr1:176257963-176281155:+
Coord C1 exon
chr1:176257963-176258067
Coord A exon
chr1:176273977-176274068
Coord C2 exon
chr1:176281058-176281155
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTCTTTCCCTCAGCGT
3' ss Score
11.73
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
GGCCAAGCATACCTACCATAAATCTTTGCTGGAACAAGTTCAAGAGTTGGAGATGAAGACAAGAGAGCTGGGAAAAGCCATGCTTCGTGACAGTAATGGAAAGAG
Seq A exon
CGTGAACGAACGTGATCATTTGTTAAAAAGGCTTGGCAGGAAAACTCCTCCGAGCCTTTTCCGTGCTCATTCTGTCCAGCAAAGTGTATCAC
Seq C2 exon
ATGGATATGCGTTTTCTCAAGAAGAACACGGTGTTGTCTCCCAGTCACAAGTTGTTCGATCCTACGACACAACCAAAAGGAGAACAGAAATAGAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017106_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.125 C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAAGCATACCTACCATAA
R:
GGTTGTGTCGTAGGATCGAACA
Band lengths:
179-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]