MmuEX0006947 @ mm9
Exon Skipping
Gene
ENSMUSG00000021983 | Atp8a2
Description
ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 [Source:MGI Symbol;Acc:MGI:1354710]
Coordinates
chr14:60266368-60303856:-
Coord C1 exon
chr14:60303752-60303856
Coord A exon
chr14:60273386-60273477
Coord C2 exon
chr14:60266368-60266761
Length
92 bp
Sequences
Splice sites
3' ss Seq
CGCTCTTTGCTTTCTTGCAGGAT
3' ss Score
12.47
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
GGCCAAGCACACCTGCAAAAAGACTCTGCTGGAGGAGGTGCAGGAGCTGGAGACCAAGTCCCGAGTGATGGGCAAGGCGATGCTTCGAGACAGTAACGGAAAGAG
Seq A exon
GATGAACGAGCGTGACCGTCTGATCAAGAGGCTCAGCAGGAAGACACCTCCAACCCTCTTCCGAACAGGCTCCATCCAGCAGTGTGTCAGCC
Seq C2 exon
ATGGGTATGCCTTTTCTCAAGAAGAGCATGGAGCTGTTACACAGGAGGAAATAGTCCGCGCTTATGATACCACCAAAGAGAATTCAAGGAAGAAATAAGACGCAAAGTTTCCTGATGGCTCCAAGGAAAGAGATTCAGTTTGTTGCACACAGTGTTAACAGTTTTGTCAGCAAAGACTGGCGCCAGCAGCCAGACACCAGAGAACACATTTCTGTGGCCTTAGCCGACCAGTTTGTTAGCAGCTCTCTGTCCTTGTGTAGTCCCTGGGCATAGGCGTCAGGGGAAGCCATTCTCCCAGCTTGTCTGCAGCGCTTGGCCCAACTTCTGTTTACGTCATTATGAAGCATTCAGCTGGGCTTTGTGAGGTGTGAAATTAAAAACTATGTTTCACCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021983-'45-46,'45-45,46-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.156 C2=0.531
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCAAGTCCCGAGTGAT
R:
AGCCATCAGGAAACTTTGCGT
Band lengths:
177-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: