DreEX0016071 @ danRer10
Exon Skipping
Gene
ENSDARG00000077492 | atp8a2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:ZFIN;Acc:ZDB-GENE-100209-2]
Coordinates
chr24:21226105-21237590:-
Coord C1 exon
chr24:21237486-21237590
Coord A exon
chr24:21229047-21229138
Coord C2 exon
chr24:21226105-21227313
Length
92 bp
Sequences
Splice sites
3' ss Seq
GTGTGTCTCTGTGTGTCCAGTCT
3' ss Score
6.86
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
AGGAAGACGTACAGTGAGGAAGACCCTGTTGGAGGAGGTGCAGGAGCTGGAGGCACGGGCTGTGGACCCTGGAGCAGCCGTTCTCAGAGATGCCAGCGGCCGCAG
Seq A exon
TCTGAACGAGCGTGCCCACCTGCTGACACGGGTCTTCAGAAAAACGCCTTCCAGCGTGGGACGCTCCAACTCGGTGCAGCAGACCGTGTCAC
Seq C2 exon
ATGGATATGCGTTCTCACAGGAGGAGCATGGTGTGGTCTCTCAGTCGCAGGTCGTCCGCTCCTACGACACTACCCGCCAGCGGCCTAGTCTGTAGCTGAGGCTCTACCGCAACAGCTGCTGGAGACTTTAACCACACACCTGTGCTGGGTGAATCCCGTGCTGAGGCCTTTAAGCTGAATATAAACTGAACTGGGCACAGCTACCGCAAACACCCGGCCGAGCTACATAACACACCGCCTCCCGATGAGGCCAGAGGGAGCGGATTTACAGGAAAAATACAAAACGCAGGGTTGGGGTGGGCAGGAAAAATACAAAACGCAGGGTTGGGGTGGGCGGGCAAATTCACACACTGAAATGGCCAGTTGAAATGCACTACACATGAGATGAACGGACTGGCAAACGGAGCCAAGTAGCATCCAGAAGTGGAAACCAGAGACAATGGTGTCTGTATAACCATTCGCGAGTCACAAATCTGCTTCATTTGGTTCTATATGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077492-'52-48,'52-47,58-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.158 C2=0.161
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSDART00000153695fB1423
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGCCGTTCTCAGAGATG
R:
TGTGGTTAAAGTCTCCAGCAGC
Band lengths:
170-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]