BtaEX6031015 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011156 | ATP8A1
Description
probable phospholipid-transporting ATPase IA [Source:RefSeq peptide;Acc:NP_777263]
Coordinates
chr6:62893173-62901178:-
Coord C1 exon
chr6:62901086-62901178
Coord A exon
chr6:62894450-62894541
Coord C2 exon
chr6:62893173-62893270
Length
92 bp
Sequences
Splice sites
3' ss Seq
CGTTTGCACCTGCTCTGCAGCCT
3' ss Score
5.92
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
TATCAAGAGGACTGCTTTTAAAACATTAGTAGATGAAGTTCAGGAGCTGGAGGCAAAATCTCAAGACCCAGGAGCAGTTGTGCTTGGAAAAAG
Seq A exon
CCTCACAGAGAGGGCGCAACTGCTCAAGAACGTCTTTAAGAAGAACCACGTGAACTTGTACCGGTCAGAATCACTGCAACAAAACCTGCTCC
Seq C2 exon
ATGGGTATGCTTTCTCTCAAGATGAAAATGGAATCGTCTCACAGTCTGAAGTGATTAGAGCATATGATACCACAAAGCAGAGACCTGATGAGTGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011156-'52-60,'52-59,53-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.094
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTAGTAGATGAAGTTCAGGAGCT
R:
ACCACTCATCAGGTCTCTGCT
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]