GgaEX6035619 @ galGal3
Exon Skipping
Gene
ENSGALG00000014236 | ATP8A1
Description
NA
Coordinates
chr4:70133185-70139158:+
Coord C1 exon
chr4:70133185-70133277
Coord A exon
chr4:70137833-70137924
Coord C2 exon
chr4:70138574-70139158
Length
92 bp
Sequences
Splice sites
3' ss Seq
CATGTCTGCTTTCTTTCTAGCTT
3' ss Score
10.14
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
Exon sequences
Seq C1 exon
AGTAAAAAGAGCTACTTTTAAGACACTGGTAGATGAAGTTCAGGAGTTGGAAGCAAAGTCTGAGGATCCTGGGGCAGTTGTACATGGCAAGAG
Seq A exon
CTTAACTGAAAGAGCCCAACTACTGAAGAATGTCTTTAAGAAGAACCATGTCAACCTGTATCGCTCTGATTCTCTGCAGCAAAACTTGCTTC
Seq C2 exon
ATGGCTATGCTTTCTCTCAAGATGAAAATGGCATTGTTTCCCAATCTGAAGTAATACGAGCTTATGATACCACAAAACAAAGGCCTGAGGAATGGTGAAAGAACACAGCTCAAAATTCAGGCCTTATAAGTTGCTTTTGTGAGACAGACTACTAGATCTTTGCTGGGAGCTGCGACCATGGCACAGTTATCAGCAATTTTAAGATCTGTGATGGTCTTATTCCATACAGTTTGGATTTATGTATTCAGTAGACATAAGCACTGTGCAACTATACTATAACACAACATCTCTAAATTTTTTACCAGGTATTCGCTTAGCCTTTGTAAACAGATCGGAATTTACCTTATATCTTGCCAGCTTGCTTATTTTACAATGAAGTTGAATCAGTACTGGTTATGTACTTGGAAGGTAATGATCAGATTGCTAAACATACTTTACATTGACAGACCATTGGCATCTGTGAAGGTTTTTTTAAGTGGCAATGTATACAGTTGATAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014236-'38-42,'38-41,40-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.094
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGCAAAGTCTGAGGATCC
R:
AGGCCTGAATTTTGAGCTGTGT
Band lengths:
170-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]