RnoEX0013422 @ rn6
Exon Skipping
Gene
ENSRNOG00000034200 | Atp8a1
Description
ATPase phospholipid transporting 8A1 [Source:RGD Symbol;Acc:1309619]
Coordinates
chr14:42198210-42206311:+
Coord C1 exon
chr14:42198210-42198302
Coord A exon
chr14:42204637-42204728
Coord C2 exon
chr14:42206016-42206311
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTTTTGTGCCTACTTCACAGCCT
3' ss Score
6.7
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
CATCAAGAGGACAGCCTTTAAAACATTGGTGGATGAAGTTCAGGAGCTCGAAGCAAAATCTCAAGACCCAGGCGCAGTCGTACTTGGCAAAAG
Seq A exon
CCTCACGGAGAGGGCACAGCTGCTCAAAAATGTCTTTAAGAAGAACCACGTGAATCTGTACCGCTCTGAGTCCTTACAACAGAACCTGCTCC
Seq C2 exon
ACGGCTATGCTTTCTCTCAAGATGAAAATGGCATCGTCTCACAGTCTGAAGTGATTAGAGCCTATGATACCACGAAACAGAGGCCAGATGAGTGGTGATTGGCAGACCTAAGCCACCGCCCCCCCCCCCCGCTGTGTCTCTTTTTTTGAGGAGCGCTGTCACAGTCTAAGGTCATCACTGCAACCTGCTGACCAATTCCAGTCTGGTCCCTGGAGAGAAAAGGTGGATCTGAGCTCATCTCACAGATGGATTTCAAGGACATAAGTGCTATGTGACTGCTGTAACACCATCGTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034200-'45-54,'45-53,47-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.094
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000044017fB1765
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGATGAAGTTCAGGAGC
R:
CCAATCACCACTCATCTGGCC
Band lengths:
169-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]