MmuEX6017978 @ mm9
Exon Skipping
Gene
ENSMUSG00000037685 | Atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:MGI Symbol;Acc:MGI:1330848]
Coordinates
chr5:68009379-68022022:-
Coord C1 exon
chr5:68021930-68022022
Coord A exon
chr5:68015249-68015340
Coord C2 exon
chr5:68009379-68013935
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTGCCTGCCCCACAGCCT
3' ss Score
9
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
Exon sequences
Seq C1 exon
CATCAAGAGGACGGCCTTTAAAACCTTAGTGGATGAAGTTCAGGAGCTTGAGGCGAAATCTCAAGACCCGGGCGCAGTCGTACTTGGAAAGAG
Seq A exon
CCTCACGGAGAGAGCGCAGCTGCTCAAGAACGTCTTTAAGAAGAACCACGTGAATCTGTACCGCTCCGAGTCCCTGCAGCAGAACCTGCTTC
Seq C2 exon
ACGGCTATGCTTTCTCTCAAGATGAAAACGGCATCGTCTCACAGTCTGAAGTCATCAGAGCCTATGACACCACGAAACAGAGGCCCGATGAGTGGTGATTGGCAGGCCTAAGCCACCGGCCCCCCCGCTGTGTCTCTGAGGAGAACCATCACAGTCTAAGGTCATCACTGTAACCTGCTGACCAATTCCAGTCTGGTCCATGGGGAGAAAAAGTGGATCTGAGCTCATCTCACAGATGAATTTCAAGGACATAGCGCTATGTGACTACTGTAATACCATTGTCCTTGGATGTCCTCAAAGTACCTGCTAAGGCTTTGTAAATCGATATTGGAAATTACCTTGTATCTTGCCACAGTGCTTTCTCAAAATGGGGACAGGTCAGTGTTCACAAGCCGTCCCTCTGGGGCTGTAACTATCGTTCATTGGCTCAACCACCAGTCAATCAACCATTCAAAAGAAACAACAACTCAGAAGTGATGTTAAGGGAAGGACTCTCAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037685-'51-46,'51-45,52-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.094
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTTCAGGAGCTTGAGGC
R:
CTTAGGCCTGCCAATCACCAC
Band lengths:
172-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: