BtaEX6056474 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025428 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr12:33540837-33548388:+
Coord C1 exon
chr12:33540837-33540929
Coord A exon
chr12:33546102-33546196
Coord C2 exon
chr12:33548294-33548388
Length
95 bp
Sequences
Splice sites
3' ss Seq
CCAGTCTGTGTTTGATTTAGTTT
3' ss Score
7.73
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
GATTAGAAACACCTGCCACAGAACTTTGCTGGAAGAGGTTCGGGAGATGGAAAGCAGCGGAGTTCAGGTACTTCGCAGAGACTCTGTACAGAG
Seq A exon
TTTCAAGGTGGAGGAAGTGAATCTCCAAAGGTCCTCGAGTCCCAGGCCCTGTCAGGTGATCTTCCGGAACAACTCTGTTGACCTAGGTGCCCCAC
Seq C2 exon
ATGGATATGCGTTTTCTCAGGTAGAACGAGCTGTGATTTCTCAGGAAGAACTAGTCCGATCTTATGACACCACCAAAAACAAACCCCAGAAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025428-'36-39,'36-38,37-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.312
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCACAGAACTTTGCTGGA
R:
TCTGGGGTTTGTTTTTGGTGGT
Band lengths:
171-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]