GgaEX1015437 @ galGal3
Exon Skipping
Gene
ENSGALG00000016565 | F1N9F1_CHICK
Description
NA
Coordinates
chr3:107878164-107879399:-
Coord C1 exon
chr3:107879277-107879399
Coord A exon
chr3:107878395-107878439
Coord C2 exon
chr3:107878164-107878273
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTCTCCGCTTCCCACTGCAGGAT
3' ss Score
11.43
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GCTGAGGACCGTCTCTTCAAGCATCTCTTCACGGGCTACAACCGGTGGTCACGGCCGGTGCCCAACACCTCCGATGTGGTCATAGTGAAGTTTGGGCTGTCCATAGCCCAGCTGATCGATGTT
Seq A exon
GATGAGAAGAACCAAATGATGACCACAAATGTTTGGCTGAAGCAG
Seq C2 exon
GAATGGAGTGACTACAAGCTGCGCTGGAACCCAGAGGACTTTGACAACGTCACCTCCATCAGGGTGCCCTCTGAGATGATCTGGATCCCCGACATCGTGCTCTACAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016565-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.8=65.0)
A:
PF0293118=Neur_chan_LBD=FE(6.8=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGACCGTCTCTTCAAGCA
R:
CGCAGCTTGTAGTCACTCCAT
Band lengths:
144-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]