GgaEX1016289 @ galGal3
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
NA
Coordinates
chr8:11998612-12006625:+
Coord C1 exon
chr8:11998612-11998665
Coord A exon
chr8:12005990-12006043
Coord C2 exon
chr8:12006518-12006625
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTATCCTCACACATGTATAGGGT
3' ss Score
5.31
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GGTCCTCAAGGCCCCCCAGGCTCAATCGGCTCTGTTGGAGGTGTTGGGGAAAAG
Seq A exon
GGTGAACCTGGAGAAGCTGGTAATCCTGGACCTCCTGGAGAATCTGGAACATCT
Seq C2 exon
GGTCCAAAAGGTGAAAGGGGAGAAAAAGGTGAGGCTGGTCCACCTGGAGCAGCTGGACCACCAGGTGCTAAAGGACCTCCAGGTGATGATGGGCCTAAGGGTAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180-'53-54,'53-53,54-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAATCGGCTCTGTTGGAG
R:
TAGGCCCATCATCACCTGGAG
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]