GgaEX1016301 @ galGal3
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
NA
Coordinates
chr8:11960831-11961498:+
Coord C1 exon
chr8:11960831-11960884
Coord A exon
chr8:11960974-11961018
Coord C2 exon
chr8:11961445-11961498
Length
45 bp
Sequences
Splice sites
3' ss Seq
GTTTCTGTTGTTTGTTGCAGGGC
3' ss Score
10.89
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GGTCCACGGGGACTACTGGGCCCCAGAGGTACACCTGGTCCCCCTGGACAACCT
Seq A exon
GGCATTGCAGGTATTGATGGACCTTCAGGCCCAAAGGGAAACATG
Seq C2 exon
GGTCCTCAAGGGGAGCCAGGACCCCCTGGTCAGCAAGGAATCCCAGGCCCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180-'24-24,'24-23,25-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(26.6=100)
A:
PF0139113=Collagen=FE(21.9=100)
C2:
PF0139113=Collagen=PD(20.3=72.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACGGGGACTACTGGG
R:
GCCTGGGATTCCTTGCTGAC
Band lengths:
100-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]