GgaEX1016330 @ galGal3
Exon Skipping
Gene
ENSGALG00000015908 | COL12A1
Description
NA
Coordinates
chr3:83550787-83560421:+
Coord C1 exon
chr3:83550787-83550894
Coord A exon
chr3:83558958-83559074
Coord C2 exon
chr3:83560278-83560421
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGGTGTAAATCTTTTGCAGTTA
3' ss Score
6.37
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATTCATTCATGTTGTTGTGAGCTGAAAGGGCAGACATGAGGACAGCGCTGTGCTCGGCGGTGGCTGCGCTGTGTGCCGCCGCCCTCCTCTCCTCCATCGAGGCTGAAG
Seq A exon
TTAATCCACCGTCAGACTTGAATTTTACAATTATAGATGAACATAATGTTCAAATGTCATGGAAAAGGCCACCAGATGCAATAGTGGGTTACAGGATAACTGTGGTTCCTACAAATG
Seq C2 exon
ATGGACCGACTAAAGAATTTACTCTTTCACCTAGCACAACCCAAACTGTCTTATCAGATCTTATACCTGAAATAGAGTATGTTGTATCAATAGCTTCATATGATGAGGTAGAGGAGAGTCTACCTGTTTTTGGCCAACTAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015908-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
PF0004116=fn3=PU(47.5=95.0)
C2:
PF0004116=fn3=PD(51.2=83.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTTGTGAGCTGAAAGGGC
R:
TTGTTAGTTGGCCAAAAACAGGT
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]