RnoEX6036654 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87145820-87155042:-
Coord C1 exon
chr8:87154934-87155042
Coord A exon
chr8:87147351-87147467
Coord C2 exon
chr8:87145820-87145963
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCTCAGCTCTCTTTTCGCAGTTG
3' ss Score
7.98
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATCCCTTCATGAGGCTGTGAGCTTTGAGGCACAAGCATGCAGACCGGGCTTCCCCGAGCGCTGGCCGCCCTGGGCGTGGCCCTACTCCTGTCTTCTATTGAGGCAGAAG
Seq A exon
TTGACCCACCTTCCGACTTGAATTTTAAAATTATAGATGAAAATACTGTCCATATGTCATGGGAGAGACCAGCTGATCCAATTGTGGGTTACAGAATAACAGTGGACTCTACAACAG
Seq C2 exon
ATGGGCCTACTAAAGAATTTACCCTTGCAGCTAGTACCACTGAAACCCTATTATCAAACCTTATTCCTGAAACACAGTACGTGGTCACCATCACTTCCTACGATGAAGTAGAAGAAAGTGTGCCGGTTATAGGCCAACTAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'8-7,'8-5,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.125 C2=0.102
Domain overlap (PFAM):
C1:
NO
A:
PF0004116=fn3=PU(47.5=95.0)
C2:
PF0004116=fn3=PD(51.2=83.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGCTGTGAGCTTTGAGG
R:
TGTTAGTTGGCCTATAACCGGC
Band lengths:
244-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]