GgaEX1016835 @ galGal3
Exon Skipping
Gene
ENSGALG00000002546 | Q90689_CHICK
Description
NA
Coordinates
chr17:8222720-8223172:+
Coord C1 exon
chr17:8222720-8222827
Coord A exon
chr17:8222953-8223042
Coord C2 exon
chr17:8223119-8223172
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTTTGTCCCTATCGTTGCAGGGG
3' ss Score
9.79
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGCCCAACTGGTGAAACTGGTCCAATGGGTGAGCGAGGACATCCAGGTCCTCCGGGTCCTCCGGGTGAACAAGGTCTTCCTGGCCTCACTGGGAAGGAAGGGACCAAG
Seq A exon
GGGGACCCCGGTCCTGCTGGCCTCCCAGGGAAGGATGGTCCCCCAGGCTTGCGAGGCTTCCCTGGAGAAAGAGGTCTGCCTGGCCCCATT
Seq C2 exon
GGTTCTCCAGGGCTGAAAGGCAACGAAGGTCCCCCAGGCCCCCCTGGTCCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546-'47-49,'47-48,48-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(53.0=100),PF0139113=Collagen=PU(7.1=13.9)
A:
PF0139113=Collagen=PD(14.1=33.3),PF0139113=Collagen=PU(41.3=86.7)
C2:
PF0139113=Collagen=FE(24.6=100),PF0139113=Collagen=PU(2.6=11.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAACTGGTGAAACTGGTCC
R:
GGGACCTTCGTTGCCTTTCAG
Band lengths:
139-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]