GgaEX1016844 @ galGal3
Exon Skipping
Gene
ENSGALG00000002546 | Q90689_CHICK
Description
NA
Coordinates
chr17:8227136-8227851:+
Coord C1 exon
chr17:8227136-8227189
Coord A exon
chr17:8227276-8227383
Coord C2 exon
chr17:8227798-8227851
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATGTCTCCTCTTTCCCTCAGGGT
3' ss Score
11.71
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GGCTTGCCTGGACCTCCTGGTGAGAAGGGAGAAACAGGAGATGTTGGGCAAATG
Seq A exon
GGTCCACCAGGTCCACCTGGGCCCAGAGGCCCCTCCGGCCCACCAGGAGCAGACGGACCCCAAGGCCCTGCTGGGGGAATAGGAAATCCTGGTGCAGTAGGAGAGAAG
Seq C2 exon
GGTGAGCCTGGTGAATCTGGTGAGCCTGGTCTGCCTGGAGAGGTCGGCCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546-'55-58,'55-57,56-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(10.3=44.4)
A:
PF0139113=Collagen=PU(8.2=22.2)
C2:
PF0139113=Collagen=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTGCCTGGACCTCCT
R:
GCAGGCCGACCTCTCCAG
Band lengths:
106-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]