GgaEX1016852 @ galGal3
Exon Skipping
Gene
ENSGALG00000002546 | Q90689_CHICK
Description
NA
Coordinates
chr17:8215839-8217478:+
Coord C1 exon
chr17:8215839-8215892
Coord A exon
chr17:8216779-8216823
Coord C2 exon
chr17:8217425-8217478
Length
45 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTTTATTTGTAAAAGGGC
3' ss Score
3.85
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
GGTCCACGAGGGGAAAGAGGCCCTAGGGGAAGCACTGGGAAACCTGGCCCAAAG
Seq A exon
GGCAACTCTGGTGGTGATGGCCCCCCTGGTCCTCCTGGCGAACGG
Seq C2 exon
GGACCACCAGGGCCTCAAGGACCAACCGGATTTCCTGGACCAAAAGGCCCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546-'42-44,'42-43,43-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(26.6=100),PF0139113=Collagen=FE(19.1=100)
A:
PF0139113=Collagen=FE(16.5=100)
C2:
PF0139113=Collagen=FE(20.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCACGAGGGGAAAGAGG
R:
CTTTTGGTCCAGGAAATCCGGT
Band lengths:
100-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]