GgaEX1016854 @ galGal3
Exon Skipping
Gene
ENSGALG00000002546 | Q90689_CHICK
Description
NA
Coordinates
chr17:8217425-8221656:+
Coord C1 exon
chr17:8217425-8217478
Coord A exon
chr17:8218072-8218125
Coord C2 exon
chr17:8221603-8221656
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACTTTGGTTGTCTGCTGTAGGGT
3' ss Score
8.83
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
GGACCACCAGGGCCTCAAGGACCAACCGGATTTCCTGGACCAAAAGGCCCCCCT
Seq A exon
GGTCCTCCTGGGAAGGATGGATTGCCTGGTCACCCCGGACAGAGAGGAGAAACC
Seq C2 exon
GGTTTCCAAGGCAAGACTGGCCCACCTGGCCCCCCTGGTGTTGTAGGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546-'44-46,'44-45,45-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.0=100)
A:
PF0139113=Collagen=FE(28.8=100),PF0139113=Collagen=PU(7.0=27.8)
C2:
PF0139113=Collagen=PD(13.5=66.7),PF0139113=Collagen=FE(25.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCAGGGCCTCAAGGA
R:
CTGAGGGCCTACAACACCAGG
Band lengths:
105-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]