GgaEX1016986 @ galGal3
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9338949-9339412:+
Coord C1 exon
chr12:9338949-9338993
Coord A exon
chr12:9339208-9339240
Coord C2 exon
chr12:9339350-9339412
Length
33 bp
Sequences
Splice sites
3' ss Seq
CGTGGGTTCTGTCCCCACAGGGT
3' ss Score
11.24
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
Exon sequences
Seq C1 exon
GGTGCTGCTGGCCCCCCGGGGAGCCAGGGTCCATCTGGGATGAAG
Seq A exon
GGTGATCCAGGGGAACCTGGTGCCAGCATCCGG
Seq C2 exon
GGATTGCCTGGTCCCCAGGGCAGCATGGGGCTGCCTGGCCCCCCAGGACCCCCTGGTCTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'71-76,'71-75,72-76=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(21.2=100),PF0139113=Collagen=PU(10.1=53.3)
A:
PF0139113=Collagen=PD(12.1=72.7),PF0139113=Collagen=FE(12.7=100)
C2:
PF0139113=Collagen=FE(25.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]