RnoEX0023518 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117716434-117716762:+
Coord C1 exon
chr8:117716434-117716478
Coord A exon
chr8:117716593-117716625
Coord C2 exon
chr8:117716700-117716762
Length
33 bp
Sequences
Splice sites
3' ss Seq
GGTTTCTGGGTCTTTTATAGGGG
3' ss Score
7.42
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGTCTTGCTGGCCCTGCAGGGCCCCAGGGACCTTCTGGCCTGAAG
Seq A exon
GGGGAGCCCGGAGAGACAGGACCCCCAGGACGG
Seq C2 exon
GGTCTGCCTGGACCTACTGGAGCTGTGGGACTTCCTGGCCCTCCTGGCCCTTCAGGCCTCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'89-86,'89-85,90-86
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.3=100),PF0139113=Collagen=PU(2.8=13.3)
A:
PF0139113=Collagen=FE(14.5=100),PF0139113=Collagen=FE(13.9=100)
C2:
PF0139113=Collagen=PD(0.1=0.0),PF0139113=Collagen=FE(27.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTGCTGGCCCTGCAG
R:
CAGGAGGGCCAGGAAGTCC
Band lengths:
90-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]