GgaEX1016996 @ galGal3
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9340761-9341918:+
Coord C1 exon
chr12:9340761-9340886
Coord A exon
chr12:9341667-9341738
Coord C2 exon
chr12:9341883-9341918
Length
72 bp
Sequences
Splice sites
3' ss Seq
CACTGCTGTGTCCCCCTCAGGGT
3' ss Score
10.17
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GGCGACATTGGTTTGCCAGGACCTCCAGGACCCCCGGGCTTAGTGGGCATCGCTGGGGCACCGGGACAGCCAGGCCTGAGAGGGGACAGCGGGCAGCCTGGCCCACCAGGAGCCCCTGGAGAGCGG
Seq A exon
GGTGCTTTTGGCTTCCCTGGGAGAGATGGTGCCGCAGGGCCACCTGGACCCCAAGGGCCCCCAGGGCCAGTG
Seq C2 exon
GGCATACAAGGGGCCTCGGGGCTGAAGGGTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'83-88,'83-87,84-88=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(67.2=100),PF0139113=Collagen=PU(23.7=33.3)
A:
PF0139113=Collagen=PD(1.6=4.2),PF0139113=Collagen=FE(39.0=100)
C2:
PF0139113=Collagen=FE(18.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATTGGTTTGCCAGGACCT
R:
CTTGTCACCCTTCAGCCCC
Band lengths:
159-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]