RnoEX6037743 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117719312-117719813:+
Coord C1 exon
chr8:117719312-117719419
Coord A exon
chr8:117719582-117719653
Coord C2 exon
chr8:117719778-117719813
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTTGCCCCATTTTTCTGTAGGGT
3' ss Score
10.13
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GGAGACTTGGGCCCCCCTGGTGCCCCCGGTGCTCCTGGTATTGTTGGATTTCCTGGTCAGCCAGGACCTCGAGGAGAGACGGGCCAGCCAGGGCCTGTTGGAGAGCGG
Seq A exon
GGTCTGGCAGGCCCTCCAGGGAGAGAAGGTGCCCCAGGTCCCTTGGGACCACCTGGACCACCGGGGTCAGTG
Seq C2 exon
GGAGCACCTGGCGCCTCTGGATTCAAAGGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'102-98,'102-97,104-98=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(60.3=100),PF0139113=Collagen=PU(28.3=47.2)
A:
PF0139113=Collagen=PD(8.6=20.8),PF0139113=Collagen=FE(38.3=100)
C2:
PF0139113=Collagen=FE(18.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTGCTCCTGGTATTGTTG
R:
CTTGTCTCCTTTGAATCCAGAGGC
Band lengths:
119-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]