GgaEX1017004 @ galGal4
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr12:9072273-9084504:+
Coord C1 exon
chr12:9072273-9072326
Coord A exon
chr12:9072409-9072471
Coord C2 exon
chr12:9084442-9084504
Length
63 bp
Sequences
Splice sites
3' ss Seq
CCCTTGCCAATCTCTTCCAGGGT
3' ss Score
9.22
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GGTCCCCCCGGATTGGTTGATGGGACGGTGCCTCAAGGGGAGCCAGGCCCCCCG
Seq A exon
GGTCCACCTGGGGAGCCCGGCCCACGGGGACTTGCTGGTACTCCTGGCCCCAAGGGTGAGAAG
Seq C2 exon
GGAGAGCTGGGGTTGTCGGGAGCACCCGGCGTCCCCGGGAAGGAGGGGCTCATGGGACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811_MULTIEX2-7/78=6-75
Average complexity
C3
Mappability confidence:
96%=100=95%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=FE(20.4=100),PF0139113=Collagen=PU(21.2=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCGGATTGGTTGATGG
R:
GTCCCATGAGCCCCTCCTTC
Band lengths:
108-171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]