GgaEX1017530 @ galGal4
Exon Skipping
Gene
ENSGALG00000001169 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr17:8994450-9008058:+
Coord C1 exon
chr17:8994450-8994563
Coord A exon
chr17:9005123-9006067
Coord C2 exon
chr17:9007893-9008058
Length
945 bp
Sequences
Splice sites
3' ss Seq
TTTCTAAATCTCTTTCGCAGGTG
3' ss Score
10.44
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GGGAGACCTGCTTTACTAACATCAATGAGTGCGAGTCTCAGCCATGTCAGAATGGAGGTCACTGCGTGGACCTTGTTGATGGCTTTCTTTGTCATTGTTTACCAGGTTATTCAG
Seq A exon
GTGTGGAATGTGCTGTTAACATCAATGAGTGTGAGGAGGGTCCCTGCAAGAATGGAGCTGTCTGTGAGGATGGCATTGCTGACTATACCTGCCACTGTGCCCCTAGCCAGGATGGCATTGTATGGGGAGGGAAGAACTGCTCTGTCAAGCTCACTGGGTGCCAGACACATGACTGCCAAAATGAGGCCTTGTGTATCCCGACTTACCAAGCTGAGAGCCACGGCCACCTGTGCCAGTGCCAGCCTGGTTTCTATGATGCCACATGCTCAACACCAACAACATTTTCCTTTGCTTCCAGAGGGTATCTCCTCATTGAGCTGCCCGTGAACAATCAGAGCAGGAGGGAGGTAGCAGGAGAGCAGCTTGCCAGTGTGTCCCTCCGGTTCCGAACCACCTTGCCCAGCGCCATCCTTTTTTACCGAGGCCATGAAGCTGAATACTTATTCCTGGAGCTCTTGGATGGCATTCTGCGTACAGAACTGAAGAGGCAGGATGAGTACCTCCTGCTGCTGGAGGAGCTGAGAGTTGATGATGGCCATTGGCATAAAGTTGAAGTTGTTCTGCAGAACACTGTGCAGCTCAAACTCTGGCACGACTCCTGTGATGCAGGTGTCTGCATGCAGAGCTCTCCTATCCCACACAATGCTACTCCGATCCCACATGCCTTCCTGAGTGTGTATATTGGAGGTGCTCAGGATCCACTGGCCAACAACACACAAAGCCAGCAGGGCTTTGTTGGCTGCCTGGAAGACTTGCAGGTGGATGCTGAAGCTGTGCTCCCGGTGGCTCTCCCTGTGAGCGAGGTTTCCTCTGTGACACAGGGCTGTGACCGCACTGAGTGGTGCCTCTCTGAGCCCTGCTTTCATGGCGGGCTGTGTGTGGACCTTTGGACAACGTTCAGGTGTGACTGTTTGAGGCCGTATGGAGGCCCTGCTTGCTCATATG
Seq C2 exon
TCTGAACCATGTCAGAATGGTGGAAGGTGCATTGTCACGTGGAATGATTTCCATTGCAGCTGTCCAGCAAATTTCACTGGGAAGTTTTGTGAAGAGAGAGTCTGGTGTGAAAGTGACCCATGTCCTGAAGCTACCACCTGTATAGATGTTCCAGCAGGATATGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001169_MULTIEX1-3/4=2-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(3.9=5.1),PF0000822=EGF=PU(93.3=71.8)
A:
PF0000822=EGF=PD(3.3=0.3),PF0000822=EGF=WD(100=11.4),PF0000822=EGF=WD(100=11.1),PF0221019=Laminin_G_2=WD(100=40.8),PF0000822=EGF=WD(100=9.8)
C2:
PF0000822=EGF=PD(90.3=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCTGCTTTACTAACATCA
R:
ACACATATCCTGCTGGAACATCT
Band lengths:
279-1224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]