MmuEX6100942 @ mm10
Exon Skipping
Gene
ENSMUSG00000035403 | Crb2
Description
crumbs family member 2 [Source:MGI Symbol;Acc:MGI:2679260]
Coordinates
chr2:37787659-37791591:+
Coord C1 exon
chr2:37787659-37787772
Coord A exon
chr2:37790128-37791000
Coord C2 exon
chr2:37791086-37791591
Length
873 bp
Sequences
Splice sites
3' ss Seq
TTGGCTGATCGCCCCTTTAGGCC
3' ss Score
7.5
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
GGAATGACTGCAGCATGGATGTGGATGAGTGTGCCTCAGGGCCGTGCCTCAATGGAGGTAGCTGCCAGGACCTGCCCAATGGTTTCCAGTGCTACTGCCAGGATGGATACACAG
Seq A exon
GCCTGACATGTCAGGAAGATATGGATGAATGCCAGTCGGAACCATGCCTGCATGGTGGAACCTGCAGCGACACTGTAGCAGGCTACATCTGCCAGTGCCCTGAGGCCTGGGGTGGACATGACTGTTCTGTGCAGCTCACAGGCTGCCAGGGCCATACCTGCCCACTGGCTGCCACCTGCATCCCCACCTTCAAGTCTGGCCTCCACGGTTACTTCTGCCGCTGCCCACCGGGGACCTATGGGCCTTTCTGTGGCCAGAATACGACCTTCTCGGTTGTGTCTGGGAGTTCTGTGTGGGGATTGGTGCCAGCTGCTGCCTCCCTGGGTCTGGCACTGAGATTTCGTACCACCCTGCTTGCCGGAACCCTGGCTACTCTCAAAGACACTCGGGACAGCTTGGAGCTGGTTCTGGTGGGGGCCGTGCTCCAAGCCACACTCTCGAGACATGGCACTGCGGTGCTCATCCTTACACTGCCTGACCTAGCCTTAAATGATGGGCATTGGCACCAGGTGGAAGTGACGCTCCACCTGGGAACCCTGGAGCTGCGGCTCTGGCACGAGGGCTGCCCTGGCCAGCTCTGTGTGGCCTCTGGTCCGGTGGCTACAGGCCCTACAGCCTCGGTGGCCTCTGGGCCTCCGGGATCCTACTCCATCTATCTGGGCGGCGGGGTCTTTGCCGGCTGCTTCCAGGATGTGCGTGTGGAAGGGCACCTTCTGCTGCCTGAGGAGCTCAAGGGAACTGTGCTTCTGGGTTGTGAGCGCAGGGAACCTTGCCAGCCTCTGCCTTGTGCCCATGGAGGGGCCTGCGTGGACCTGTGGACTCACTTCCGCTGCGACTGCCCGAGACCTTACCGTGGAGCCACATGCACTGATG
Seq C2 exon
AGGTTCCTGCTGCCACTTTTGGCTTGGGTGGAGCCACGAGCTCAGCCTCTTTTCTGCTCCACCAACTAGGCCCAAACCTCACCGTGTCATTTTTCCTCCGCACCCGCGAACCTGCCGGCCTGTTGCTCCAGTTTGCCAATGATTCAGTTGCGAGCCTGACTGTGTTCCTGAGTGAGGGCCAGATCCGGGCTGAGGGGCTGGGTCACCCTGCTGTGGTCCTCCCTGGGCGCTGGGATGATGGACTCCCCCACTTGGTGATGCTCAGCTTTGGGCCTGACCAGCTGCAGGACCTGGGCCAGCGGCTGTATGTGGGTGGGAGGTTCTACCCTGATGACACCCAGCTCTGGGGTGGGCCCTTCCGAGGCTGTCTCCAGGACCTACAACTCAACAGCATCCACCTCCCCTTCTTCTCTTCCCCGATGGAGAACTCAAGTTGGCCCAGTGAACTGGAAGCTGGCCAGTCCTCCAACCTCACCCAGGGTTGTGTCTCTGAGGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035403-'10-9,'10-7,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.033
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(3.8=5.1),PF0000822=EGF=PU(90.3=71.8)
A:
PF0000822=EGF=PD(6.5=0.7),PF0000822=EGF=WD(100=10.6),PF0221019=Laminin_G_2=WD(100=42.5),PF0000822=EGF=WD(100=10.6)
C2:
PF0000822=EGF=PU(3.2=0.6)
Main Skipping Isoform:
ENSMUST00000050372fB8212
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTACTGCCAGGATGGAT
R:
GGTAGAACCTCCCACCCACAT
Band lengths:
354-1227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types