MmuEX6100942 @ mm9
Exon Skipping
Gene
ENSMUSG00000035403 | Crb2
Description
crumbs homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:2679260]
Coordinates
chr2:37643179-37647111:+
Coord C1 exon
chr2:37643179-37643292
Coord A exon
chr2:37645648-37646520
Coord C2 exon
chr2:37646606-37647111
Length
873 bp
Sequences
Splice sites
3' ss Seq
TTGGCTGATCGCCCCTTTAGGCC
3' ss Score
7.5
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
GGAATGACTGCAGCATGGATGTGGATGAGTGTGCCTCAGGGCCGTGCCTCAATGGAGGTAGCTGCCAGGACCTGCCCAATGGTTTCCAGTGCTACTGCCAGGATGGATACACAG
Seq A exon
GCCTGACATGTCAGGAAGATATGGATGAATGCCAGTCGGAACCATGCCTGCATGGTGGAACCTGCAGCGACACTGTAGCAGGCTACATCTGCCAGTGCCCTGAGGCCTGGGGTGGACATGACTGTTCTGTGCAGCTCACAGGCTGCCAGGGCCATACCTGCCCACTGGCTGCCACCTGCATCCCCACCTTCAAGTCTGGCCTCCACGGTTACTTCTGCCGCTGCCCACCGGGGACCTATGGGCCTTTCTGTGGCCAGAATACGACCTTCTCGGTTGTGTCTGGGAGTTCTGTGTGGGGATTGGTGCCAGCTGCTGCCTCCCTGGGTCTGGCACTGAGATTTCGTACCACCCTGCTTGCCGGAACCCTGGCTACTCTCAAAGACACTCGGGACAGCTTGGAGCTGGTTCTGGTGGGGGCCGTGCTCCAAGCCACACTCTCGAGACATGGCACTGCGGTGCTCATCCTTACACTGCCTGACCTAGCCTTAAATGATGGGCATTGGCACCAGGTGGAAGTGACGCTCCACCTGGGAACCCTGGAGCTGCGGCTCTGGCACGAGGGCTGCCCTGGCCAGCTCTGTGTGGCCTCTGGTCCGGTGGCTACAGGCCCTACAGCCTCGGTGGCCTCTGGGCCTCCGGGATCCTACTCCATCTATCTGGGCGGCGGGGTCTTTGCCGGCTGCTTCCAGGATGTGCGTGTGGAAGGGCACCTTCTGCTGCCTGAGGAGCTCAAGGGAACTGTGCTTCTGGGTTGTGAGCGCAGGGAACCTTGCCAGCCTCTGCCTTGTGCCCATGGAGGGGCCTGCGTGGACCTGTGGACTCACTTCCGCTGCGACTGCCCGAGACCTTACCGTGGAGCCACATGCACTGATG
Seq C2 exon
AGGTTCCTGCTGCCACTTTTGGCTTGGGTGGAGCCACGAGCTCAGCCTCTTTTCTGCTCCACCAACTAGGCCCAAACCTCACCGTGTCATTTTTCCTCCGCACCCGCGAACCTGCCGGCCTGTTGCTCCAGTTTGCCAATGATTCAGTTGCGAGCCTGACTGTGTTCCTGAGTGAGGGCCAGATCCGGGCTGAGGGGCTGGGTCACCCTGCTGTGGTCCTCCCTGGGCGCTGGGATGATGGACTCCCCCACTTGGTGATGCTCAGCTTTGGGCCTGACCAGCTGCAGGACCTGGGCCAGCGGCTGTATGTGGGTGGGAGGTTCTACCCTGATGACACCCAGCTCTGGGGTGGGCCCTTCCGAGGCTGTCTCCAGGACCTACAACTCAACAGCATCCACCTCCCCTTCTTCTCTTCCCCGATGGAGAACTCAAGTTGGCCCAGTGAACTGGAAGCTGGCCAGTCCTCCAACCTCACCCAGGGTTGTGTCTCTGAGGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035403-'5-7,'5-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.034
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(3.8=5.1),PF0000822=EGF=PU(90.3=71.8)
A:
PF0000822=EGF=PD(6.5=0.7),PF0000822=EGF=WD(100=10.6),PF0221019=Laminin_G_2=WD(100=42.5),PF0000822=EGF=WD(100=10.6)
C2:
PF0221019=Laminin_G_2=WD(100=32.5),PF0000822=EGF=PU(3.2=0.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTACTGCCAGGATGGAT
R:
GGTAGAACCTCCCACCCACAT
Band lengths:
354-1227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: