BtaEX0010053 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014391 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr11:94513226-94517541:+
Coord C1 exon
chr11:94513226-94513339
Coord A exon
chr11:94516081-94516944
Coord C2 exon
chr11:94517033-94517541
Length
864 bp
Sequences
Splice sites
3' ss Seq
TGGCCTGGTCTCTCCCGAAGGCC
3' ss Score
6.99
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
GGGATGACTGCGGCGAGGATGTAGATGAGTGTGCCTCTCGGCCGTGCCTCAGTGGAGGCCTCTGCCAGGACCTGCCCAATGGCTTCCACTGCCACTGTCCAGACGGCTACACAG
Seq A exon
GCCCAACGTGTCAGGAAGACATGGACGAATGCCTGTCGGAGCCTTGCCTCCATGGTGGGACCTGTGAAGACACCGTGGCAGGCTACATCTGTGGGTGCCCCGAGGCCTGGGGTGGATTGGATTGTTCTGTGCCACTCACCGGCTGCCAGGGCCACACTTGCCCACCGACTGCCACCTGCGTCCCTACCTTCGAGTCAGGGGTTCACAGTTACACCTGCCGCTGCCCACCTGGTACCCATGGACCTTTCTGTGGCCAGAATACTACATTCTCCATGGTGGCTGGGAACCCCTTACGGGCTTCGGTGCCAGCTGGCAGCTCCCTAGGTCTTGCCCTGAGGTTTCGTACCACGATACGTGTGGGTGCCTTGGCCACGTGCTCTGACACTCAAGGCAGCGTGGAGCTGGCGCTGGTGGAGGCCAGGCTTCAGGCCACACTCTGGAGCCACGGCAAGAATGTGCTCGTCCTGAGGCTGCTGGAACCACCCCTCAATGATGGCCACTGGCACCGAGTGGAGGTGACGCTCCGCCTGGGGGTCCTGGAGTTGCGGCTCTGGCATGAAGACTGTCCCGCCCACCTCTGTGTGGCCTCCAGTCCCATGGCCACGGCTGCCCCGGCCCCCACGCCTGCTGGGTCCCGCTTCACCCAGCTGGGCGGCGTGGCCTTTGCGGGCTGCCTCCAGGATGTGCAGGTGGATGGGCATCTCCTGCTGCCCGAGGACCTTGGTGAGAATGTCCTCCTGGGCTGCTGGCACCAGGAGCACTGCCAACCTCCGCCTTGTGCCCACGGAGGGGTCTGCGTGGACCTGTGGACTCACTTCCATTGTGACTGCCCCCGGCCCTACAGAGGTCCCACGTGTGCTGATG
Seq C2 exon
AGGTTCCTGCTGCCACCTTTGGCTTGGGGGGCACCCTGAGCTCTGCCTCCTTCCTACTCGACCAGCCGCCAGGCCCCAACCTCACCGTGTCCTTCCTCCTCCGCACCCGGGAACCTGCTGGCCTTCTGCTCCAGCTCACCAACGGTTCGGCCGCTGGCCTGACAGTGTTCCTGAGCGAGGGCCAGATCTGGGCCGAGGCACTGGGCAGTCCTGCTCTGGTGCTCCCGGGGCGCTGGGATGACGGGCTCCGCCACCTGGTGACACTCAGCTTCGGGCCTGATCAGCTGTGGGGTGTGGGGCAGCAGGTGCACGTGGGCGGCAGGCTCCTCCCCGGTGACGCCGAGCCCTGGGGTGGGCCCTTCCGAGGCTGCATGCAGGACGTGCGACTCAATGACCTCCACCTCCCCTTCTTTCCACCACTGCTGGGGAACTCCAGCCTGCCCAGCGTGCCCGGCCGCGGGCAGTCCTGGAACCTCACCATGGGCTGCATCTCTGAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014391-'5-7,'5-6,7-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.012
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(23.1=7.7),PF0000822=EGF=PU(90.3=71.8)
A:
PF126612=hEGF=PD(23.1=1.0),PF0000822=EGF=WD(100=10.7),PF0221019=Laminin_G_2=WD(100=41.9),PF0000822=EGF=WD(100=10.7)
C2:
PF0000822=EGF=PU(3.2=0.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGACCTGCCCAATG
R:
CACACCCCACAGCTGATCAG
Band lengths:
347-1211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development