BtaEX0010054 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014391 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr11:94512858-94516944:+
Coord C1 exon
chr11:94512858-94513043
Coord A exon
chr11:94513226-94513339
Coord C2 exon
chr11:94516081-94516944
Length
114 bp
Sequences
Splice sites
3' ss Seq
CACAACTGGGCCTCTTGCAGGGG
3' ss Score
6.13
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
Exon sequences
Seq C1 exon
GCTACAGTGGCGAGCGGTGTGAGGTGGATGAGGACGAATGTGCGGTGGGCCCCTGCCAGCATGGGGGCCAGTGCCTGCAGCGCTCGGATCCAACCCTCTATGGGGGCATCCAGGCCACTTTCCCAGATGACTTCAGCTTTCGCCAGGCTGCTGGCTTCGTGTGCCGCTGCCCTCCGGGCTTTGAGG
Seq A exon
GGGATGACTGCGGCGAGGATGTAGATGAGTGTGCCTCTCGGCCGTGCCTCAGTGGAGGCCTCTGCCAGGACCTGCCCAATGGCTTCCACTGCCACTGTCCAGACGGCTACACAG
Seq C2 exon
GCCCAACGTGTCAGGAAGACATGGACGAATGCCTGTCGGAGCCTTGCCTCCATGGTGGGACCTGTGAAGACACCGTGGCAGGCTACATCTGTGGGTGCCCCGAGGCCTGGGGTGGATTGGATTGTTCTGTGCCACTCACCGGCTGCCAGGGCCACACTTGCCCACCGACTGCCACCTGCGTCCCTACCTTCGAGTCAGGGGTTCACAGTTACACCTGCCGCTGCCCACCTGGTACCCATGGACCTTTCTGTGGCCAGAATACTACATTCTCCATGGTGGCTGGGAACCCCTTACGGGCTTCGGTGCCAGCTGGCAGCTCCCTAGGTCTTGCCCTGAGGTTTCGTACCACGATACGTGTGGGTGCCTTGGCCACGTGCTCTGACACTCAAGGCAGCGTGGAGCTGGCGCTGGTGGAGGCCAGGCTTCAGGCCACACTCTGGAGCCACGGCAAGAATGTGCTCGTCCTGAGGCTGCTGGAACCACCCCTCAATGATGGCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014391_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(16.1=7.9),PF126612=hEGF=PU(69.2=14.3)
A:
PF126612=hEGF=PD(23.1=7.7),PF0000822=EGF=PU(90.3=71.8)
C2:
PF126612=hEGF=PD(23.1=1.0),PF0000822=EGF=WD(100=10.7),PF0221019=Laminin_G_2=WD(100=41.9),PF0000822=EGF=WD(100=10.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGAGGTGGATGAGGACGA
R:
TGTCTTCACAGGTCCCACCAT
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development