GgaEX1017529 @ galGal4
Exon Skipping
Gene
ENSGALG00000001169 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr17:8993150-9006067:+
Coord C1 exon
chr17:8993150-8993289
Coord A exon
chr17:8994450-8994563
Coord C2 exon
chr17:9005123-9006067
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTATATTTTCACTTCAAAGGGG
3' ss Score
6.91
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTACCAATGTGACTGCAGTGACACAGGCTTTGAAGGGGACCACTGTGAGTTGGATATCCTGGAGTGTGCCTCTGAGCCCTGTCTGAACAATGCCACATGTGTTGAAGGAATCAAGAACTACAGCTGTGCCTGCTGGACAG
Seq A exon
GGGAGACCTGCTTTACTAACATCAATGAGTGCGAGTCTCAGCCATGTCAGAATGGAGGTCACTGCGTGGACCTTGTTGATGGCTTTCTTTGTCATTGTTTACCAGGTTATTCAG
Seq C2 exon
GTGTGGAATGTGCTGTTAACATCAATGAGTGTGAGGAGGGTCCCTGCAAGAATGGAGCTGTCTGTGAGGATGGCATTGCTGACTATACCTGCCACTGTGCCCCTAGCCAGGATGGCATTGTATGGGGAGGGAAGAACTGCTCTGTCAAGCTCACTGGGTGCCAGACACATGACTGCCAAAATGAGGCCTTGTGTATCCCGACTTACCAAGCTGAGAGCCACGGCCACCTGTGCCAGTGCCAGCCTGGTTTCTATGATGCCACATGCTCAACACCAACAACATTTTCCTTTGCTTCCAGAGGGTATCTCCTCATTGAGCTGCCCGTGAACAATCAGAGCAGGAGGGAGGTAGCAGGAGAGCAGCTTGCCAGTGTGTCCCTCCGGTTCCGAACCACCTTGCCCAGCGCCATCCTTTTTTACCGAGGCCATGAAGCTGAATACTTATTCCTGGAGCTCTTGGATGGCATTCTGCGTACAGAACTGAAGAGGCAGGATGAGTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001169_MULTIEX1-2/4=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(41.2=29.2),PF0000822=EGF=PU(80.6=52.1)
A:
PF0000822=EGF=PD(3.9=5.1),PF0000822=EGF=PU(93.3=71.8)
C2:
PF0000822=EGF=PD(3.3=0.3),PF0000822=EGF=WD(100=11.4),PF0000822=EGF=WD(100=11.1),PF0221019=Laminin_G_2=WD(100=40.8),PF0000822=EGF=WD(100=9.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACTACAGCTGTGCCTGC
R:
CGTGGCTCTCAGCTTGGTAAG
Band lengths:
250-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]