DreEX6047967 @ danRer10
Exon Skipping
Gene
ENSDARG00000060081 | crb2b
Description
crumbs family member 2b [Source:ZFIN;Acc:ZDB-GENE-060610-1]
Coordinates
chr8:2812110-2832783:+
Coord C1 exon
chr8:2812110-2812292
Coord A exon
chr8:2813026-2813139
Coord C2 exon
chr8:2831860-2832783
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTCCATCTTCTGCTTCACAGGTG
3' ss Score
9.3
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTTATGAAGGAGTGAACTGTGAGCTGGATGTGGACGAGTGTGTTTCTCAGCCATGTGAGAATGAAGGCCAGTGTTTCCAGCGCTCAGACTCCAGCCTCTACAGAGTTCTGCCTGAACTGGACACTGACTTCAGCTTCCAGAGCGCAGCCGGTTACCTGTGCCAGTGCGTATCTGGCTTCACAG
Seq A exon
GTGAAAACTGCTCAGTGAATGTGAATGAATGCGAATCTGCGCCATGTGAGAACGGAGGATCTTGTGAAGATCTCGTCAATGCTTTTCAATGCTCATGTCCCCCAGGGTTCGCAG
Seq C2 exon
GTGCAGTGTGTGAGACTGAGCTGGACGAGTGTGAGAGTGATCCGTGTCAGAACGGCGGCCGCTGTGAGGACTCCATTAATGCCTACACATGCCACTGTCCTCCTGCTGAGCCGGGACACCTGCCATGGGGCGGTCCTGACTGCAGCGTCCAGCTGACCGGCTGTGTGGACCAACCCTGCCAAAACAACGCCACCTGCATCCCTTCAATACAGCATCAGCAGCACCAGCACACCTGCAGATGCCCATCCGGCTTCCACGGCACCCACTGCCAGACCTCCACCACCTTCTCCATCACCCGCGGAGGATATTTACTTATAGATCTTCATCACAAAAACAACAGGAGTCGCAGATATTTGGATTCACATGTGCCGAGCGTCCAGCTACGCTTCCGGACGACGCTACAGGATGGAGTCATCTTCTTCCGGGGAGGTCAAAATCACTTTTTTGTGCTTGAGTTAATTGCTGGAGAGCTGTGCTGCAGAGCTCAGTCTGGAGATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060081-'6-7,'6-5,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(16.1=8.1),PF0000822=EGF=PU(94.1=77.4)
A:
PF0000822=EGF=PD(3.9=5.1),PF0000822=EGF=PU(92.1=89.7)
C2:
PF0000822=EGF=PD(5.3=0.6),PF0000822=EGF=WD(100=10.0),PF0000822=EGF=WD(100=11.3),PF0221019=Laminin_G_2=WD(100=39.8),PF0000822=EGF=WD(100=10.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGAGTGTGTTTCTCAGCC
R:
AGGAGGACAGTGGCATGTGTA
Band lengths:
256-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]