RnoEX0024413 @ rn6
Exon Skipping
Gene
ENSRNOG00000025498 | Crb2
Description
crumbs 2, cell polarity complex component [Source:RGD Symbol;Acc:1309368]
Coordinates
chr3:22049697-22053202:+
Coord C1 exon
chr3:22049697-22049882
Coord A exon
chr3:22050059-22050172
Coord C2 exon
chr3:22052330-22053202
Length
114 bp
Sequences
Splice sites
3' ss Seq
CAGCTGAGCCTTCTTAACAGGGG
3' ss Score
2.96
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
Exon sequences
Seq C1 exon
GCTTCAGTGGAGAGCGGTGCGAAGTGGATGAGGATGAGTGTGCATCGGATCCCTGTCATAATGGGGGCCGGTGCTCGCAGCGCTCTGACCCGACCTTGTATGGGGGTGTTCAGGCCATCTTCCCCGGAGCCTTCAGCTTCAGCCAAGCCGCTGGCTTCCTTTGCAGCTGTCCTCCGGGCTTTGCTG
Seq A exon
GGGATGACTGCAGCGTGGACGTGAATGAGTGTGCCTCAGAGCCATGTCTCAACGGAGGTAGCTGCCAGGACCTGCCCAATGGTTTCCAGTGCTACTGTCAGGATGGATACACAG
Seq C2 exon
GACTGACATGTCAGGAGGATACGGACGAGTGCCAGTCGGAACCATGCCTGCACGGTGGGACCTGCAGCGACACTGTAGCAGGCTACATCTGCCAGTGCCCCGAGGCCTGGGGTGGACATGACTGTTCTGTGCAGCTCACAGGCTGCCAGGGCCACGCCTGCCCACTGGCTGCCACCTGCATCCCCACCTTCAAGTCTGGTTTCCACAGTTATATCTGCCGTTGCCTGCCTGGGACCTATGGGTCTTTCTGTGACCAGAATACCACTTTCTCGGTTGTGTCTGGGAGTTCCGTGTGGGGATTGGTGCCAGCTGGTGCCTCCCTGGCTTTTGCACTGAGATTTCGTACCACCCTGCTTGCTGGAGCCCTGGCTACTCTTAAGGACTCACGGGACAGCTTGGAGCTGGTTCTGGTGGGGGCCATGCTCCAAGCCACACTCTGGAGACGTGGCACTGCTGACCTTGTCCTTACACTGCCAGACCTAGCCTTAAATGACGGGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025498_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(16.1=7.9),PF0000822=EGF=PU(94.2=77.8)
A:
PF0000822=EGF=PD(3.8=5.1),PF0000822=EGF=PU(90.3=71.8)
C2:
PF0000822=EGF=PD(6.5=0.7),PF0000822=EGF=WD(100=10.6),PF0221019=Laminin_G_2=WD(100=42.5),PF0000822=EGF=WD(100=10.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACCCGACCTTGTATGGG
R:
GTGAGCTGCACAGAACAGTCA
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]