GgaEX1017529 @ galGal3
Exon Skipping
Gene
ENSGALG00000001169 | CRB2
Description
NA
Coordinates
chr17:9706757-9713210:+
Coord C1 exon
chr17:9706757-9706939
Coord A exon
chr17:9707453-9707566
Coord C2 exon
chr17:9713160-9713210
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTATATTTTCACTTCAAAGGGG
3' ss Score
6.91
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTACACAGGGCAGCATTGTGAAGAGGATGTGAACGAGTGTGCGACAGATCCCTGTCACAATGGAGGTGTATGCTTTGAGCGATCCAACCAGTCTTATTATGGATCACAACCTGACTTCCCCAGCGATTTCAGCTACAGCCAAGCAGCTGGTTTCCTCTGTTGGTGCCAGCCAGGCTTTGCAG
Seq A exon
GGGAGACCTGCTTTACTAACATCAATGAGTGCGAGTCTCAGCCATGTCAGAATGGAGGTCACTGCGTGGACCTTGTTGATGGCTTTCTTTGTCATTGTTTACCAGGTTATTCAG
Seq C2 exon
GGTATTACTGTAATGCACTGAGGGAGAGCACTGCAAGTACGCATTCTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001169-'7-10,'7-9,10-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(16.1=19.2),PF0000822=EGF=PU(37.5=46.2)
A:
PF0000822=EGF=PD(3.9=5.1),PF0000822=EGF=PU(93.3=71.8)
C2:
PF0000822=EGF=PD(3.3=5.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACACAGGGCAGCATTGTG
R:
TGCGTACTTGCAGTGCTCTC
Band lengths:
226-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]