GgaEX1021057 @ galGal3
Exon Skipping
Gene
ENSGALG00000016138 | DSCAM
Description
NA
Coordinates
chr1:111728437-111737447:-
Coord C1 exon
chr1:111737259-111737447
Coord A exon
chr1:111733847-111734137
Coord C2 exon
chr1:111728437-111728613
Length
291 bp
Sequences
Splice sites
3' ss Seq
AAATATATCATTGCTACTAGAGC
3' ss Score
2.18
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GTTATATTTTGCAGTATTCAGAAGATAACAGTGAGCAGTGGGGCAGTTTTCCCATTAGCCCTAGTGAGAGGTCCTACCGTTTAGAAACACTGAAATGTGGCACTTGGTACAAGTTTACTTTAACTGCACAGAATGGAGTAGGACCAGGACGCATCAGCGAGATCATTGAGGCCAAAACGCTTGGAAAAG
Seq A exon
AGCCACAGTTTTCAAAGGAACAAGAGCTCTTTGCTAGCATCAACACCACGCGAGTGAGGCTGAACCTGATTGGTTGGAATGACGGTGGCTGCCCCATCACTTCTTTCACCCTGGAGTACCGGCCCTTTGGGACAACAGTCTGGACAACTGCTCAGCGAACATCTCTGTCAAAGTCCTACATACTGTATGACCTCCAAGAGGCAACCTGGTATGAATTGCAAATGAGAGTGTGCAACAGTGCTGGCTGTGCAGAGAAACAAGCCAAATTTGCAACGCTCAATTACGATGGCA
Seq C2 exon
GTACAATCCCTCCACTTATTAAGTCAGTTGTGCAAAGTGAGGAGGGGCTGACAACCAACGAAGGGCTAAAGATGCTGGTGACCATTTCCTGTATCTTGGTTGGGGTCTTACTGCTTTTTGTGATGCTGCTGATTGTGCGGAGAAGAAGGAGGGAGCAGAGGCTGAAGAGGCTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138-'25-26,'25-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(61.9=81.2)
A:
PF0004116=fn3=WD(100=82.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTAGTGAGAGGTCCTACC
R:
CCTCTGCTCCCTCCTTCTTCT
Band lengths:
293-584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]