MmuEX6063660 @ mm10
Exon Skipping
Gene
ENSMUSG00000050272 | Dscam
Description
Down syndrome cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1196281]
Coordinates
chr16:96640738-96645208:-
Coord C1 exon
chr16:96645020-96645208
Coord A exon
chr16:96643779-96644069
Coord C2 exon
chr16:96640738-96640914
Length
291 bp
Sequences
Splice sites
3' ss Seq
GACACTGTTCTCTCCCACAGAAC
3' ss Score
11.87
5' ss Seq
GCAGTAAGC
5' ss Score
5.06
Exon sequences
Seq C1 exon
GCTACATCCTGCAATACTCCGAGGATAACAGTGAGCAGTGGGGCAGCTTTCCCATCAGCCCCAGCGAGCGTTCATACCGCTTGGAAAACCTAAAGTGTGGGACTTGGTATAAGTTCACCCTTACTGCCCAAAATGGAGTAGGTCCCGGGCGCATAAGTGAAATCATAGAAGCCAAAACCCTGGGGAAAG
Seq A exon
AACCCCAGTTCTCCAAGGAGCAGGAGCTCTTCGCCAGCATCAATACCACCCGAGTGAGGCTGAATCTGATTGGCTGGAATGACGGCGGCTGTCCAATCACCTCATTCACTCTTGAATACAGACCCTTTGGGACCACGGTCTGGACCACAGCTCAGCGGACCTCCCTTTCCAAGTCCTACATTCTGTATGACCTGCAAGAAGCCACGTGGTATGAACTGCAGATGAGAGTGTGCAACAGCGCCGGCTGTGCGGAGAAGCAAGCCAACTTCGCCACGCTGAACTACGATGGCA
Seq C2 exon
GTACAATCCCTCCACTCATTAAGTCAGTTGTCCAAAGCGAAGAAGGGCTGACAACCAACGAAGGGCTCAAGATCCTCGTGACCATCTCCTGCATCCTGGTCGGGGTTCTACTGCTCTTTGTGCTTCTGCTGGTTGTGCGGAGGAGACGGCGAGAGCAGAGGCTGAAGAGGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050272-'38-40,'38-37,39-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(61.9=81.2)
A:
PF0004116=fn3=WD(100=82.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGTTCATACCGCTTGGAA
R:
CTCTCAGCCTCTTCAGCCTCT
Band lengths:
301-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types