MmuEX6063660 @ mm9
Exon Skipping
Gene
ENSMUSG00000050272 | Dscam
Description
Down syndrome cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1196281]
Coordinates
chr16:96862345-96866815:-
Coord C1 exon
chr16:96866627-96866815
Coord A exon
chr16:96865386-96865676
Coord C2 exon
chr16:96862345-96862521
Length
291 bp
Sequences
Splice sites
3' ss Seq
GACACTGTTCTCTCCCACAGAAC
3' ss Score
11.87
5' ss Seq
GCAGTAAGC
5' ss Score
5.06
Exon sequences
Seq C1 exon
GCTACATCCTGCAATACTCCGAGGATAACAGTGAGCAGTGGGGCAGCTTTCCCATCAGCCCCAGCGAGCGTTCATACCGCTTGGAAAACCTAAAGTGTGGGACTTGGTATAAGTTCACCCTTACTGCCCAAAATGGAGTAGGTCCCGGGCGCATAAGTGAAATCATAGAAGCCAAAACCCTGGGGAAAG
Seq A exon
AACCCCAGTTCTCCAAGGAGCAGGAGCTCTTCGCCAGCATCAATACCACCCGAGTGAGGCTGAATCTGATTGGCTGGAATGACGGCGGCTGTCCAATCACCTCATTCACTCTTGAATACAGACCCTTTGGGACCACGGTCTGGACCACAGCTCAGCGGACCTCCCTTTCCAAGTCCTACATTCTGTATGACCTGCAAGAAGCCACGTGGTATGAACTGCAGATGAGAGTGTGCAACAGCGCCGGCTGTGCGGAGAAGCAAGCCAACTTCGCCACGCTGAACTACGATGGCA
Seq C2 exon
GTACAATCCCTCCACTCATTAAGTCAGTTGTCCAAAGCGAAGAAGGGCTGACAACCAACGAAGGGCTCAAGATCCTCGTGACCATCTCCTGCATCCTGGTCGGGGTTCTACTGCTCTTTGTGCTTCTGCTGGTTGTGCGGAGGAGACGGCGAGAGCAGAGGCTGAAGAGGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050272-'27-25,'27-24,28-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(61.9=81.2)
A:
PF0004116=fn3=WD(100=82.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGTTCATACCGCTTGGAA
R:
CTCTCAGCCTCTTCAGCCTCT
Band lengths:
301-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: