RnoEX6056702 @ rn6
Exon Skipping
Gene
ENSRNOG00000027992 | Dscam
Description
DS cell adhesion molecule [Source:RGD Symbol;Acc:619992]
Coordinates
chr11:37053049-37057516:-
Coord C1 exon
chr11:37057328-37057516
Coord A exon
chr11:37056065-37056355
Coord C2 exon
chr11:37053049-37053225
Length
291 bp
Sequences
Splice sites
3' ss Seq
GACACTGTTATCTCCCACAGAAC
3' ss Score
9.76
5' ss Seq
GCAGTAAGC
5' ss Score
5.06
Exon sequences
Seq C1 exon
GCTACATCCTGCAATATTCCGAGGACAACAGTGAGCAGTGGGGGAGCTTTCCCATCAGCCCCAGCGAGCGTTCCTACCGCTTGGAAAACCTAAAGTGTGGGACATGGTATAAGTTCACCCTTACTGCCCAAAATGGAGTGGGACCCGGACGCATAAGTGAAATCATAGAAGCCAAAACTCTGGGGAAAG
Seq A exon
AACCCCAGTTCTCCAAGGAGCAGGAGCTCTTCGCCAGCATCAATACCACCCGAGTGAGGCTGAATCTGATTGGCTGGAACGACGGCGGCTGTCCAATCACCTCATTCACTCTTGAGTACAGACCCTTCGGGACCACGGTCTGGACCACAGCTCAGCGGACCTCCCTTTCCAAGTCTTACATTCTGTATGACCTCCAAGAAGCCACATGGTATGAACTGCAGATGCGAGTGTGCAACAGCGCCGGCTGCGCAGAGAAGCAAGCCAACTTTGCCACGCTGAACTACGATGGCA
Seq C2 exon
GTACAATCCCTCCACTCATTAAGTCAGTTGTCCAAAGCGAAGAAGGGCTGACAACCAACGAAGGGCTCAAGATCCTCGTGACCATCTCCTGCATCCTGGTCGGGGTTCTGCTGCTCTTTGTGCTTCTGCTGGTGGTGCGAAGGAGACGGAGGGAGCAGAGGCTGAAGAGGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027992-'39-33,'39-31,41-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(61.9=81.2)
A:
PF0004116=fn3=WD(100=82.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACAACAGTGAGCAGTGG
R:
CCACCAGCAGAAGCACAAAGA
Band lengths:
304-595
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]