GgaEX1021057 @ galGal4
Exon Skipping
Gene
ENSGALG00000016138 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:107633634-107649292:-
Coord C1 exon
chr1:107649194-107649292
Coord A exon
chr1:107644983-107645273
Coord C2 exon
chr1:107633634-107633664
Length
291 bp
Sequences
Splice sites
3' ss Seq
AAATATATCATTGCTACTAGAGC
3' ss Score
2.18
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
TTCCACCAGACCAGCCAAGACTTACTGTTTCCAAAACTACATCCTCCTCTATCACTCTTTCCTGGATACCTGGAGACAATGGTGGCAGTTCTATCCGAG
Seq A exon
AGCCACAGTTTTCAAAGGAACAAGAGCTCTTTGCTAGCATCAACACCACGCGAGTGAGGCTGAACCTGATTGGTTGGAATGACGGTGGCTGCCCCATCACTTCTTTCACCCTGGAGTACCGGCCCTTTGGGACAACAGTCTGGACAACTGCTCAGCGAACATCTCTGTCAAAGTCCTACATACTGTATGACCTCCAAGAGGCAACCTGGTATGAATTGCAAATGAGAGTGTGCAACAGTGCTGGCTGTGCAGAGAAACAAGCCAAATTTGCAACGCTCAATTACGATGGCA
Seq C2 exon
ATGCAAAGAGTTTGGCTGAAATGCTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=0.000 C2=0.091
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(36.9=91.2)
A:
PF0004116=fn3=WD(100=82.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]