GgaEX1021776 @ galGal4
Exon Skipping
Gene
ENSGALG00000002420 | EGFL7
Description
EGF-like-domain, multiple 7 [Source:HGNC Symbol;Acc:HGNC:20594]
Coordinates
chr17:7750838-7752660:-
Coord C1 exon
chr17:7752473-7752660
Coord A exon
chr17:7751040-7751162
Coord C2 exon
chr17:7750838-7750950
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACCTGCTCTCCTTTGCTCAGCCG
3' ss Score
6.4
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
AGTTCGCCGCTGAACAGCAAGCCATGCAGTAGGAGCCCACGCTTCCCACTGAGGAGTGACCCCGGTGTGTGCCACACAGCCCAGAGCGCTGCAGGGAGGGGACAGGACATGCACCGAATCAGCTGCCTTCTTTCGGGACTCGCCTTCATCCTCAGTGCCACCAGCACTGACAGCTTTGCCCGGGTGGG
Seq A exon
CCGCAGGACCTGTGCTGCAGAGCCGCGGAGCCGCACAGCCACCCACACCGAGTCCCACGTGCAGCCTGTGTACCTGCCCTACCTCACCACCTGCCAGGGCCACCGCCTGTGCAGCACCTACAG
Seq C2 exon
GACCATCTACAAGGTTGCCTACCGGCAGGTGTACAAACAGGTACCCCAGCCTGTGGCCTCGTGCTGTCCTGGCTGGAGCAGAACCAGCAGCTACGAGCTCAGCTGCAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002420_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PU(0.1=0.0)
A:
PF075468=EMI=PU(57.7=97.6)
C2:
PF075468=EMI=PD(40.8=74.4),PF079748=EGF_2=PU(9.1=7.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCTTCCCACTGAGGAGT
R:
CGTAGCTGCTGGTTCTGCTC
Band lengths:
246-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]