DreEX6083115 @ danRer10
Exon Skipping
Gene
ENSDARG00000100657 | egfl7
Description
EGF-like-domain, multiple 7 [Source:ZFIN;Acc:ZDB-GENE-040429-2]
Coordinates
chr21:7684925-7688515:-
Coord C1 exon
chr21:7688363-7688515
Coord A exon
chr21:7685113-7685238
Coord C2 exon
chr21:7684925-7685037
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTATATGTGTGTGTTTCAGGAG
3' ss Score
10.98
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTAGCGGATTGACAGACCTGCAGTCTCTCTTTCTGCTGTCAGACACACCTGAGAAACAGACAGACTAACAGAGATGTACACAGCGCTTCTGCTCTCCTCCTCTTTGTTTCTCCTGCATGTGACCAGCACACCTCAGACTCACAGTCATCACGG
Seq A exon
GAGGAGAGTGTGTGTTGGTGATGTCTGGAGTCGTCGCGTGTCTTACAGCACAGAGTCTTTTCTTCAGCCTGTACACAAACCCTACATCACCATGTGCCAAAACCACCGCATGTGCAGCACGTACAA
Seq C2 exon
GACCATCTACAAGGTTTCTTATAGGCAGGTGAGCAGAGCAGCTCCTAATCTACAAATTTACCCAGAATGCTGTCCGGGGTGGAGGCGCATGCATTCACACAACTGCAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100657-'3-2,'3-1,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PU(0.1=0.0)
A:
PF075468=EMI=PU(56.8=97.7)
C2:
PF075468=EMI=PD(41.9=79.5),PF079748=EGF_2=PU(11.8=10.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATTGACAGACCTGCAGTC
R:
TGCAGTTGTGTGAATGCATGC
Band lengths:
256-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]