BtaEX0012529 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025410 | EGFL8
Description
Bos taurus EGF-like-domain, multiple 8 (EGFL8), mRNA. [Source:RefSeq mRNA;Acc:NM_001099187]
Coordinates
chr23:27026015-27026647:-
Coord C1 exon
chr23:27026521-27026647
Coord A exon
chr23:27026235-27026357
Coord C2 exon
chr23:27026015-27026127
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCCACATGGGTGCAGTCA
3' ss Score
4.49
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTGGCAGTCTGAAGTCAAGGAGAATCATGGGGTCCAGGGCTGAGCCGTGCACTGTCTTAGGCGGACTCTGGTTCCTCCTGCTACTGATGACAGGCGAGGGGGCCAAGGGTGGAGCCCTCAAAGAGAG
Seq A exon
TCAGGGGGTCTGCTCCAAGCAGACCCTGGTGGTCCCACTCCGTTACAATGAGTCCTACAGCCAACCTGTATATAAGCCCTATCTGACCCTGTGCTCTGGAAGGCGTGTCTGCAGCACCTACAG
Seq C2 exon
GACCACGTACCGCGTGGCCTGGAGGGAGGTGCGGAGGGAGGTGCGGCAGACCCACGCCGTGTGCTGCCAGGGCTGGAAGAAGCGGCATCCTGGGGCACTCACCTGTGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025410-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PU(0.1=0.0)
A:
PF075468=EMI=PU(57.7=97.6)
C2:
PF075468=EMI=PD(40.8=74.4),PF0000822=EGF=PU(9.4=7.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGTCTGAAGTCAAGGAGA
R:
CTTCATCACAGGTGAGTGCCC
Band lengths:
239-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development