MmuEX0016424 @ mm10
Exon Skipping
Gene
ENSMUSG00000015467 | Egfl8
Description
EGF-like domain 8 [Source:MGI Symbol;Acc:MGI:1932094]
Coordinates
chr17:34614669-34615286:-
Coord C1 exon
chr17:34615167-34615286
Coord A exon
chr17:34614879-34615001
Coord C2 exon
chr17:34614669-34614778
Length
123 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTGGTGTGCCTACAGTTT
3' ss Score
7.96
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CCCTCAGAGTGAGGGAGCCATGGGGCTCTGGGCTGAGCTGTGCATTTCCCTACGAGGACTCTCATTCTTCCTGGTGCTGATGACGGGCGAAGGGACCAGAGGAGGATCTTTCAAAGAGAG
Seq A exon
TTTGGGAGTGTGCTCCAAGCAGACGCTGCTGGTTCCTCTCCGTTACAACGAGTCCTATAGTCAACCGGTGTACAAACCCTACCTGACCTTGTGTGCGGGGAGGCGCATATGTAGCACCTACAG
Seq C2 exon
GACCACATACCGTGTGGCCTGGCGGGAGGTGAGGCGGGAGGTACCACAGACACACGTGGTGTGCTGTCAGGGCTGGAAGAAGCCACACCCAGGAGCTCTCACCTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015467-'3-7,'3-6,4-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PU(0.1=0.0)
A:
PF075468=EMI=PU(57.7=97.6)
C2:
PF075468=EMI=PD(40.8=76.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGAGTGAGGGAGCCATGG
R:
CATCACAGGTGAGAGCTCCT
Band lengths:
228-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types