RnoEX0031158 @ rn6
Exon Skipping
Gene
ENSRNOG00000000436 | Egfl8
Description
EGF-like-domain, multiple 8 [Source:RGD Symbol;Acc:1549706]
Coordinates
chr20:4379478-4380143:-
Coord C1 exon
chr20:4379987-4380143
Coord A exon
chr20:4379689-4379811
Coord C2 exon
chr20:4379478-4379587
Length
123 bp
Sequences
Splice sites
3' ss Seq
CCCCGCTGGTGTCCCTGCAGTTT
3' ss Score
9.17
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ACCAAAGAGAAGGGAAGAGCTCCTGTAACTGCTTGTCTGCAGCCCTCAGAGTGAAAGCCATGGAGCCCTGGGCTGGGTGCTGCATTTTCCTACGAGGATTCTCATTCCTCCTGGTACTGATGACAGAAGGGGCCAAAGGAGGACCTTTCAAAGAAAG
Seq A exon
TTTGGGAGTGTGCTCCAAGCAGACGCTGCTGGTTCCACTCCGTTACAATGAGTCCTACAGTCAACCAGTGTACAGACCCTACCTGACCCTGTGTGCTGGAAGGCGCATATGTAGCACCTACAG
Seq C2 exon
GACCACGTACCGCGTGGCCTGGAGGGAAGTGAGGCGGGAGGTACAGCAGACACATGTGGTGTGCTGCCAGGGCTGGAAGAAGCCACACCCAGGAGCTCTCACCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000436-'3-9,'3-8,4-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PU(0.1=0.0)
A:
PF075468=EMI=PU(57.7=97.6)
C2:
PF075468=EMI=PD(40.8=76.3),PF079748=EGF_2=PU(6.2=5.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGGGAAGAGCTCCTGT
R:
CTGGGTGTGGCTTCTTCCAG
Band lengths:
244-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]