RnoEX0031150 @ rn6
Exon Skipping
Gene
ENSRNOG00000019388 | Egfl7
Description
EGF-like-domain, multiple 7 [Source:RGD Symbol;Acc:708507]
Coordinates
chr3:4040087-4041583:+
Coord C1 exon
chr3:4040087-4040211
Coord A exon
chr3:4040375-4040491
Coord C2 exon
chr3:4041456-4041583
Length
117 bp
Sequences
Splice sites
3' ss Seq
GCTGACCCCATTCCCTGTAGCCG
3' ss Score
5.94
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GCCACAAAAAGAAGAAGGCTACCCCACTTACAGATGCAGACCATGTGGGGGTCCGGAGAGCTGCTTGTAGCGTGGTTTCTAGTACTGGCAGCAGGTGGTACTACTGAGCATGTCTACAGACCCAG
Seq A exon
CCGTAGAGTGTGTACCGTGGGGGTTTCCGGAGGCTCCATCTCAGAGACCTTTGTGCAGCGTGTATACCAGCCTTACCTCACCACTTGTGATGGACACAGAGCCTGTAGCACCTACCG
Seq C2 exon
AACCATCTACCGGACTGCCTACCGGATTGCCTATCGCCATAGCCCGGGGCTGACTCCCAGCAGGCCTCGCTATGCCTGCTGCCCTGGTTGGAAGAGGACCAACGGGCTCCCTGGAGCTTGTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019388-'11-7,'11-3,12-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PU(0.1=0.0)
A:
PF075468=EMI=PU(52.7=97.5)
C2:
PF075468=EMI=PD(45.9=77.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGAAGGCTACCCCACTT
R:
CTCCACAAGCTCCAGGGAG
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]